Improved orthologous databases to ease protozoan targets inference
نویسندگان
چکیده
منابع مشابه
Orthologous Repeats and Phylogenetic Inference
Determining phylogenetic relationships between species is a difficult problem, and many phylogenetic relationships remain unresolved, even among eutherian mammals. Repetitive elements provide excellent markers for phylogenetic analysis, because their mode of evolution is predominantly homoplasy-free and unidirectional. Historically, phylogenetic studies using repetitive elements have relied on ...
متن کاملGenomic databases and the search of protein targets for protozoan parasites.
The development of databases devoted to biological information opened the possibility to integrate, query and analyze biological data obtained from several sources that otherwise would be scattered through the web. Several issues arise in the handling of biological information, mainly due to the diversity of biological subject matter and the complexity of biological approaches towards phenomena...
متن کاملOrthologous repeats and mammalian phylogenetic inference.
Determining phylogenetic relationships between species is a difficult problem, and many phylogenetic relationships remain unresolved, even among eutherian mammals. Repetitive elements provide excellent markers for phylogenetic analysis, because their mode of evolution is predominantly homoplasy-free and unidirectional. Historically, phylogenetic studies using repetitive elements have relied on ...
متن کاملDoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants
DoOP (http://doop.abc.hu/) is a database of eukaryotic promoter sequences (upstream regions) aiming to facilitate the recognition of regulatory sites conserved between species. The annotated first exons of human and Arabidopsis thaliana genes were used as queries in BLAST searches to collect the most closely related orthologous first exon sequences from Chordata and Viridiplantae species. Up to...
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Biomedical data integration currently exists as a “loose federation of bio-nations.” (Goble 2008) While work is being done to integrate data sources it often involves “‘semantic creep’ – timid, piecemeal and ad hoc adoption of parts of standards.” (Good 2006) Linking data across resources is necessary for building integrated systems (e.g. Belleau 2008, Ruttenberg 2009); however, linking the dat...
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ژورنال
عنوان ژورنال: Parasites & Vectors
سال: 2015
ISSN: 1756-3305
DOI: 10.1186/s13071-015-1090-0